ISI-BUDS Summer 2023 Schedule (July 10 - August 18)
The program meets daily from 9 am - 3:30 pm in DBH 2011, unless otherwise specified. Lunch will be from noon to 1:30pm.
Make sure to join our Slack workspace, you should have received an email. You may want to download the Slack app because we will be using this for communication throughout the program. Make sure notifications are on.
Day 1, July 10, 2023
Topic
Materials
Happy Git and GitHub for the useR installation manual
GitHub Username Survey
Setup
R & Rstudio
Quarto
GitHub
Lab: practice reproducible reports
Solution HTML file: (Qmd file: )
Day 2, July 11
Topic
Materials
Visualizing data with ggplot
Principles of visualization
Lab: plotting with ggplot
Solution HTML file: (Qmd file: )
Day 3, July 12
Topic
Materials
Intro to probability
Lab: inverse CDF method
Solution HTML file: (Qmd file: )
Day 4, July 13
Topic
Materials
More probability and Monte Carlo Integration
Lab: Monte Carlo Integration
Solution HTML file: (Qmd file: )
Day 5, July 14
Topic
Materials
Likelihood and Monte Carlo Inference
Lab: Monte Carlo Integration
Solution HTML file: (Qmd file: )
Project 1 intro
Day 6, July 17
Topic
Materials
Summarizing Data
Changing Variables
Subsetting Data
Joining Data
Lab: Data Wrangling
Solution HTML file: (Qmd file: )
Day 7, July 18
Topic
Materials
Good Workflow Practices
Working with Dates
Working with Strings
Working with Factors
Lab: Data Wrangling 2
Solution HTML file: (Qmd file: )
Day 8, July 19
Topic
Materials
Linear Models
Day 9, July 20
Topic
Materials
Generalized Linear Models
Lab: generalized linear models
Solution HTML file: (Qmd file: )
Day 10, July 21
Topic
Materials
Mixed Effect Models
Project 3 intro
Lab: generalized linear models
Solution HTML file: (Qmd file: )
Day 11, July 24
Topic
Materials
Goals of Statistics
Data analysis plan lab
Day 12, July 25
Topic
Materials
Covariate Adjustment
FEV data
FEV R Script
Prediction
Data analysis lab data
Day 13, July 26
Topic
Materials
Prediction continued
King County data
Prediction assessment functions
Prediction assessment examples
Data analysis lab writeup
Table 1 code
Day 14, July 27
Topic
Materials
Introduction to Bayesian Thinking
Probability Review
Bayes’ Rule for Events
Bayes’ Rule for Random Variables
The Beta Prior Model
The Beta Binomial Model
Day 15, July 28
Topic
Materials
Frequentist vs. Bayesian Inference
Learning to learn independently
Diversity, Equity, and Inclusion in Biostatistics Panel